burtin

Burtin's antibiotic susceptibility measurements

Compares the performance of three antibiotics against 16 different bacteria. Based on graphic designer Will Burtin's 1951 visualization of antibiotic effectiveness, originally published in Scope Magazine and featured as an example in the Protovis project, a precursor to D3.js.

Numerical values represent the minimum inhibitory concentration (MIC) of each antibiotic, measured in units per milliliter, with lower values indicating higher antibiotic effectiveness.

As noted in the Protovis example, "Recreating this display revealed some minor errors in the original: a missing grid line at 0.01 μg/ml, and an exaggeration of some values for penicillin".

The vega-datsets version is largely consistent with the Protovis version, with one correction (changing 'Brucella antracis' to the correct 'Bacillus anthracis') and the addition of a new column, 'Genus', to group related bacterial species together.

The caption of the original 1951 visualization reads as follows:

Antibacterial ranges of Neomycin, Penicillin and Streptomycin

The chart compares the in vitro sensitivities to neomycin of some of the common pathogens (gram+ in red and gram- in blue) with their sensitivities to penicillin, and streptomycin.

The effectiveness of the antibiotics is expressed as the highest dilution in μ/ml. which inhibits the test organism.

High dilutions are toward the periphery; consequently the length of the colored bar is proportional to the effectiveness.

It is apparent that neomycin is especially effective against Staph. albus and aureus, Streph. fecalis, A. aerogenes, S. typhosa, E. coli, Ps. aeruginosa, Br. abortus, K. pneumoniae, Pr. vulgaris, S. schottmuelleri and M. tuberculosis.

Unfortunately, some strains of proteus, pseudomonas and hemolytic streptococcus are resistant to neomycin, although the majority of these are sensitive to neomycin.

It also inhibits actinomycetes, but is inactive against viruses and fungi. Its mode of action is not understood.

JSON 16 rows 6 fields 2.7 KB

Fields

FieldTypeDistributionSummaryMissing
BacteriaAdd a description for Bacteria string 16 distinct Aerobacter aerogenes 1 · Bacillus anthracis 1 · Brucella abortus 1 Missing 0
PenicillinAdd a description for Penicillin number 0.001 – 870 · mean 217.9 Missing 0
StreptomycinAdd a description for Streptomycin number 0.01 – 14 · mean 3.07 Missing 0
NeomycinAdd a description for Neomycin number 0.001 – 40 · mean 4.09 Missing 0
Gram_StainingAdd a description for Gram_Staining string 2 distinct negative 9 · positive 7 Missing 0
GenusAdd a description for Genus string 4 distinct other 9 · Streptococcus 3 · Salmonella 2 Missing 0

Profiled across all 16 rows. No field descriptions yet. Add them

Explore

Pick two fields. Scroll to zoom, drag to pan. Click the legend to isolate a gram_staining. Both fields have values in 16 of 16 rows.Pick two fields. Tap the legend to isolate a gram_staining. Both fields have values in 16 of 16 rows. Vega-Lite · input binding · scale binding · legend bindingVega-Lite · input binding · legend binding
Open This Chart in the Vega Editor

Preview

First 5 of 16 rows5 of 16 rows
BacteriaPenicillinStreptomycinNeomycinGram_StainingGenus
Aerobacter aerogenes87011.6negativeother
Bacillus anthracis0.0010.010.007positiveother
Brucella abortus120.02negativeother
Diplococcus pneumoniae0.0051110positiveother
Escherichia coli1000.40.1negativeother

Scroll sideways for all 6 fields.

Examples

Not yet seen in any gallery.

This dataset is published and documented but no Vega, Vega-Lite or Altair example uses it. A new example would be a welcome contribution.

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File
data/burtin.json · 2,743 bytes · View on GitHub